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Changed my FTP user password - Still can log into site

Hi, I recently received an eail from godaddy stating that I had malware on my site and they removed it. I contacted godaddy live chat to verify everything was ok. It was. 

I reset both my godaddy customer password and my FTP username password as well. Still though, when I use my web builder software FTP client or the "network shortcut" I created on my pc, it still logs in fine and I have acces to my files. Shouldn't it not let me log in?

Please help...I just want to make sure I changed the right passwords.

Thanks!